STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sctVType III secretion protein. (679 aa)    
Predicted Functional Partners:
sctJ
Type III secretion apparatus lipoprotein.
 
 
 0.993
epaR
Type III secretion apparatus protein.
 
 
 0.991
GLE_5121
Type III secretion family protein.
 
 
 0.983
epaP
Type III secretion apparatus protein.
 
 
 0.971
sctN
ATPase FliI/YscN family.
 
  
 0.950
gspD
General secretion pathway protein D.
  
 
 0.914
flhB
Flagellar biosynthetic protein.
 
 0.896
GLE_5123
Type III secretion protein, flhB like.
 
 0.894
fliN
Flagellar motor switch protein.
 
  
 0.884
epaO
Type III secretion apparatus protein.
  
  
 0.863
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.