STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epaPType III secretion apparatus protein. (307 aa)    
Predicted Functional Partners:
epaR
Type III secretion apparatus protein.
 
 
 0.998
GLE_5121
Type III secretion family protein.
 
 
 0.997
sctJ
Type III secretion apparatus lipoprotein.
 
 
 0.989
sctV
Type III secretion protein.
 
 
 0.959
flhA
Flagellar biosynthesis protein.
 
 
 0.958
epaO
Type III secretion apparatus protein.
  
  
 0.937
gspD
General secretion pathway protein D.
  
 
 0.925
fliN
Flagellar motor switch protein.
 
  
 0.923
sctN
ATPase FliI/YscN family.
 
  
 0.882
flhB
Flagellar biosynthetic protein.
 
 
 0.874
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.