Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GLE_5121Type III secretion family protein. (88 aa)    
Predicted Functional Partners:
epaR
Type III secretion apparatus protein.
 
 
 0.998
epaP
Type III secretion apparatus protein.
 
 
 0.995
sctJ
Type III secretion apparatus lipoprotein.
 
 
 0.994
sctV
Type III secretion protein.
 
 
 0.983
gspD
General secretion pathway protein D.
  
 
 0.970
epaO
Type III secretion apparatus protein.
  
  
 0.929
GLE_5123
Type III secretion protein, flhB like.
 
 
 
 0.906
flhA
Flagellar biosynthesis protein.
 
 
 0.904
flhB
Flagellar biosynthetic protein.
 
 
 
 0.863
sctN
ATPase FliI/YscN family.
 
  
 0.852
Your Current Organism:
Lysobacter enzymogenes
NCBI taxonomy Id: 69
Other names: ATCC 29487, DSM 2043, L. enzymogenes, LMG 8762, LMG:8762, Lysobacter enzymogenes subsp. enzymogenes, UASM 495
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