STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eif6Translation initiation factor eIF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (229 aa)    
Predicted Functional Partners:
rpl37ae
LSU ribosomal protein L37AE.
  
 
 0.999
TK0617
U3 snoRNP component, archaeal imp4 homolog, containing Brix domain; Probably involved in the biogenesis of the ribosome.
  
 
 0.999
rpl21e
LSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family.
 
   0.999
rpl35ae
LSU ribosomal protein L35AE; Belongs to the eukaryotic ribosomal protein eL33 family.
   
 
 0.999
rpl30e
LSU ribosomal protein L30E; Belongs to the eukaryotic ribosomal protein eL30 family.
  
 
 0.999
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
  
 
 0.999
TK1190
Predicted GTPase, containing NOG1 domain.
  
 
 0.999
rps8e
SSU ribosomal protein S8E.
  
 
 0.999
TK1297
Nonsense-mediated mRNA decay protein NMD3 homolog.
  
 
 0.999
rpl24e
LSU ribosomal protein L24E; Binds to the 23S rRNA.
 
 
 0.999
Your Current Organism:
Thermococcus kodakarensis
NCBI taxonomy Id: 69014
Other names: Pyrococcus sp. (strain KOD1), Pyrococcus sp. KOD1, T. kodakarensis KOD1, Thermococcus kodakaraensis KOD1, Thermococcus kodakarensis KOD1, Thermococcus kodakarensis str. KOD1, Thermococcus kodakarensis strain KOD1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.