Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IC63_00935RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)    
Predicted Functional Partners:
IC63_00930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.944
IC63_00920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.813
IC63_06100
Phage related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
IC63_09255
Phage related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
IC63_06105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
IC63_09265
isoleucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
IC63_09280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
IC63_09285
Phage related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
IC63_14085
Phage related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
IC63_06060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.679
Your Current Organism:
Paracoccus sphaerophysae
NCBI taxonomy Id: 690417
Other names: ACCC 05413, HAMBI 3106, P. sphaerophysae, Paracoccus sp. Zy-3, Paracoccus sphaerophysae Deng et al. 2011, strain Zy-3
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