Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IC63_08085Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)    
Predicted Functional Partners:
IC63_12635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.783
IC63_00195
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
    0.698
IC63_12630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.578
IC63_14145
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
IC63_08510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.564
IC63_08940
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
IC63_14140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.542
IC63_09405
Metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.499
IC63_07935
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.476
IC63_08090
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
Your Current Organism:
Paracoccus sphaerophysae
NCBI taxonomy Id: 690417
Other names: ACCC 05413, HAMBI 3106, P. sphaerophysae, Paracoccus sp. Zy-3, Paracoccus sphaerophysae Deng et al. 2011, strain Zy-3
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