STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG49351.1KEGG: sjp:SJA_C1-33000 hypothetical protein. (148 aa)    
Predicted Functional Partners:
AEG49352.1
Helix-turn-helix domain protein; KEGG: sjp:SJA_C1-33010 Xre-family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
  
 0.766
AEG47913.1
KEGG: sjp:SJA_C1-12360 hypothetical protein.
 
     0.730
AEG47899.1
KEGG: sjp:SJA_C1-12210 hypothetical protein.
 
     0.716
AEG47916.1
KEGG: sjp:SJA_C1-12390 hypothetical protein.
 
    0.715
AEG47908.1
KEGG: sjp:SJA_C1-12310 hypothetical protein; TIGRFAM: Phage major tail protein, TP901-1; PFAM: Phage major tail protein, TP901-1, subfamily 1.
  
     0.706
AEG47915.1
KEGG: sjp:SJA_C1-12380 hypothetical protein.
  
  
 0.680
AEG47912.1
KEGG: sjp:SJA_C1-12350 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02217; PFAM: Conserved hypothetical protein CHP02217.
  
    0.671
AEG48800.1
KEGG: sjp:SJA_C1-22720 hypothetical protein.
  
     0.611
AEG47904.1
KEGG: sjp:SJA_C1-12260 hypothetical protein; TIGRFAM: Phage major capsid protein, HK97; PFAM: Phage major capsid protein, HK97.
  
  
 0.609
AEG47901.1
Phage portal protein, HK97 family; KEGG: sjp:SJA_C1-12230 hypothetical protein; TIGRFAM: Phage portal protein, HK97; PFAM: Phage portal protein.
 
    0.607
Your Current Organism:
Sphingobium chlorophenolicum
NCBI taxonomy Id: 690566
Other names: FLAVOBACTERIUM SP. (STRAIN ATCC 39723), Flavobacterium sp. (ATCC 39723), Flavobacterium sp. ATCC 39723, S. chlorophenolicum L-1, Sphingobium chlorophenolicum ATCC 39723, Sphingobium chlorophenolicum L-1, Sphingobium chlorophenolicum str. L-1, Sphingobium chlorophenolicum strain L-1
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