STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEG49891.1Putative PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: sjp:SJA_C1-00070 PTS system nitrogen regulatory IIA component. (155 aa)    
Predicted Functional Partners:
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.922
AEG49892.1
Manually curated; TIGRFAM: Phenylacetic acid degradation-related protein; KEGG: sjp:SJA_C1-00080 hypothetical protein; PFAM: Thioesterase superfamily.
  
    0.879
AEG49316.1
KEGG: sjp:SJA_C1-10750 PTS HPr-related protein; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein.
 
  
 0.875
AEG49315.1
PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: sjp:SJA_C1-10760 PTS mannose-specific IIA component.
 
  
 0.822
AEG49290.1
PTSINtr with GAF domain, PtsP; SMART: GAF; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: sjp:SJA_C1-24710 phosphotransferase system enzyme I; PFAM: PEP-utilising enzyme; GAF; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region; Belongs to the PEP-utilizing enzyme family.
  
   
 0.800
AEG49893.1
PFAM: Protein of unknown function DUF1491; KEGG: sjp:SJA_C1-00090 hypothetical protein.
       0.773
AEG49314.1
UPF0042 nucleotide-binding protein yhbJ; Displays ATPase and GTPase activities.
  
  
 0.763
AEG49894.1
PFAM: Cell wall hydrolase, SleB; KEGG: sjp:SJA_C1-00100 N-acetylmuramoyl-L-alanine amidase.
  
    0.657
AEG49594.1
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.649
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
       0.641
Your Current Organism:
Sphingobium chlorophenolicum
NCBI taxonomy Id: 690566
Other names: FLAVOBACTERIUM SP. (STRAIN ATCC 39723), Flavobacterium sp. (ATCC 39723), Flavobacterium sp. ATCC 39723, S. chlorophenolicum L-1, Sphingobium chlorophenolicum ATCC 39723, Sphingobium chlorophenolicum L-1, Sphingobium chlorophenolicum str. L-1, Sphingobium chlorophenolicum strain L-1
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