STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0034PFAM: SCP-like extracellular; KEGG: sat:SYN_00196 SCP/PR1 domain-containing protein. (227 aa)    
Predicted Functional Partners:
Desaf_2297
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_38960 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.627
Desaf_0330
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_45580 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.605
Desaf_0623
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_12080 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.605
Desaf_3242
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
   
   0.605
Desaf_0686
KEGG: hypothetical protein.
   
    0.567
Desaf_0033
KEGG: dvm:DvMF_2379 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
    0.526
Desaf_0031
PFAM: NUDIX hydrolase domain; KEGG: NUDIX hydrolase.
       0.518
Desaf_0032
KEGG: dsa:Desal_1162 hypothetical protein.
       0.518
Desaf_0030
TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dsa:Desal_2300 methylenetetrahydrofolate reductase (NAD(P)H); PFAM: Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.461
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.