STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0250KEGG: hypothetical protein. (186 aa)    
Predicted Functional Partners:
Desaf_0251
TIGRFAM: Penicillin-binding protein 1A; KEGG: dsa:Desal_2168 penicillin-binding protein, 1A family; PFAM: Glycosyl transferase, family 51; Ribosomal protein S1, RNA binding domain; Penicillin-binding protein, transpeptidase.
       0.800
Desaf_0249
PFAM: Glycosyl transferase, family 39; KEGG: dde:Dde_3122 dolichyl-phosphate-mannose-protein mannosyltransferase family protein.
       0.781
Desaf_0252
PFAM: Cupin 2, conserved barrel; KEGG: dvu:DVU0632 cupin family protein.
       0.754
Desaf_0253
PFAM: Oxidoreductase FAD/NAD(P)-binding; Ferric reductase-like transmembrane component, N-terminal; Oxidoreductase FAD-binding region; KEGG: nhl:Nhal_1657 oxidoreductase FAD/NAD(P)-binding domain protein.
       0.463
Desaf_0254
Hypothetical protein.
       0.437
Desaf_0373
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.428
Desaf_2403
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.428
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.