STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0307PFAM: Oxidoreductase, molybdopterin binding protein; KEGG: gsu:GSU2723 putative sulfite oxidase subunit YedY. (343 aa)    
Predicted Functional Partners:
Desaf_3702
KEGG: dsa:Desal_1042 hypothetical protein.
  
 
 0.852
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 
 0.807
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
 0.794
Desaf_1285
KEGG: drt:Dret_0454 cytochrome c family protein.
   
 
 0.705
Desaf_1286
KEGG: dvm:DvMF_2531 cytochrome bd-type quinol oxidase subunit 1-like protein.
   
 
 0.705
Desaf_0254
Hypothetical protein.
   
 
 0.701
Desaf_3264
KEGG: dsa:Desal_1581 CDP-diacylglycerol/serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      0.676
Desaf_1490
KEGG: dsa:Desal_0370 cytochrome c family protein.
   
 
 0.656
Desaf_0098
KEGG: bra:BRADO2078 TPR repeat-containing protein.
 
   
 0.572
Desaf_0304
Transketolase; KEGG: tye:THEYE_A0954 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal.
  
  
 0.502
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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