STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0409C_GCAxxG_C_C family protein; PFAM: CGCAxxGCC motif; KEGG: dba:Dbac_1558 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Desaf_0410
PFAM: Methyltransferase type 11; KEGG: pth:PTH_0682 hypothetical protein.
 
    0.958
Desaf_0412
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Cysteine-rich region, CCG; KEGG: dae:Dtox_3439 protein of unknown function DUF224 cysteine-rich region domain protein.
 
     0.955
Desaf_0408
PFAM: Radical SAM; KEGG: radical SAM domain-containing protein.
 
     0.953
Desaf_0411
KEGG: dsa:Desal_0297 hypothetical protein.
 
     0.953
Desaf_0407
PFAM: AMP-dependent synthetase/ligase; KEGG: gur:Gura_1004 coenzyme F390 synthetase-like protein.
 
    0.949
Desaf_0413
KEGG: dvm:DvMF_0641 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; [2Fe-2S]-binding; Ferredoxin.
 
     0.906
Desaf_1320
KEGG: ppd:Ppro_1545 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SMART: Metal-dependent phosphohydrolase, HD region.
 
     0.802
Desaf_0406
PBS lyase HEAT domain protein repeat-containing protein; Manually curated; PFAM: PBS lyase HEAT-like repeat.
       0.773
Desaf_2055
PFAM: Protein of unknown function DUF169; KEGG: dbr:Deba_3208 protein of unknown function DUF169.
  
     0.630
Desaf_0415
Molybdopterin binding domain-containing protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
     0.546
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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