STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0452KEGG: dma:DMR_42510 hypothetical membrane protein. (219 aa)    
Predicted Functional Partners:
Desaf_0451
PFAM: Cysteine-rich region, CCG; KEGG: dba:Dbac_0566 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.953
Desaf_0453
KEGG: dba:Dbac_0564 hypothetical protein.
 
     0.953
Desaf_0450
PFAM: Cytochrome c, class III; KEGG: dba:Dbac_0567 cytochrome c class III.
 
  
 0.932
Desaf_3551
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dba:Dbac_0170 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.902
Desaf_1367
KEGG: dba:Dbac_0277 hypothetical protein.
  
     0.747
Desaf_1187
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Signal transduction response regulator, receiver region; PAS fold-4; ATP-binding region, ATPase-like; KEGG: dma:DMR_12910 two-component hybrid sensor and regulator; SMART: Signal transduction response regulator, receiver region; PAC motif; ATP-binding region, ATPase-like.
 
  
 0.717
Desaf_2045
Protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: hypothetical protein; manually curated; PFAM: Cysteine-rich region, CCG; Contains selenocysteine.
 
 
 0.623
Desaf_0982
KEGG: drt:Dret_0414 protein of unknown function DUF224 cysteine-rich region domain protein; manually curated; PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Contains selenocysteine.
 
 
 0.616
Desaf_1859
Protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: hypothetical protein; manually curated; PFAM: Cysteine-rich region, CCG; Contains selenocysteine.
 
 
 0.603
Desaf_1186
PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; PAS fold-4; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG: drt:Dret_0878 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS.
 
  
 0.602
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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