STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0547PFAM: Saccharopine dehydrogenase; KEGG: dba:Dbac_2320 saccharopine dehydrogenase. (398 aa)    
Predicted Functional Partners:
Desaf_0548
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.965
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.924
Desaf_1116
TIGRFAM: lysine-2,3-aminomutase; Protein of unknown function DUF160; KEGG: drt:Dret_0696 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM.
     
  0.900
Desaf_2084
Lysine 2,3-aminomutase YodO family protein; TIGRFAM: Protein of unknown function DUF160; KEGG: dde:Dde_3041 L-lysine 2,3-aminomutase; PFAM: Radical SAM.
     
  0.900
Desaf_0546
PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: mxa:MXAN_3432 multicopper oxidase domain-containing protein.
     
 0.587
Desaf_0542
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
 
   
 0.541
Desaf_0544
Hypothetical protein.
       0.537
Desaf_0545
PFAM: Outer membrane efflux protein; KEGG: mxa:MXAN_3431 outer membrane efflux protein.
       0.537
Desaf_1525
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.472
Desaf_0114
Arginase; TIGRFAM: Arginase, subgroup; KEGG: bts:Btus_0192 arginase; PFAM: Ureohydrolase; Belongs to the arginase family.
    
 0.465
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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