STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0559KEGG: gdj:Gdia_1471 hypothetical protein. (380 aa)    
Predicted Functional Partners:
Desaf_0493
PFAM: Nucleoside recognition; KEGG: dma:DMR_36040 hypothetical membrane protein.
   
    0.711
Desaf_0566
PFAM: Abortive infection protein; KEGG: sna:Snas_0624 abortive infection protein.
  
    0.671
Desaf_0947
PFAM: Abortive infection protein; KEGG: dsa:Desal_3649 abortive infection protein.
  
    0.671
folE2
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.549
Desaf_0558
Hypothetical protein.
       0.542
macB
Phosphonate-transporting ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
    0.505
Desaf_2604
KEGG: scl:sce4626 chloride peroxidase; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase.
  
     0.448
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.