STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0614KEGG: iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type. (389 aa)    
Predicted Functional Partners:
Desaf_1265
PFAM: Aldehyde dehydrogenase; KEGG: ava:Ava_3615 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.955
Desaf_2884
Alcohol dehydrogenase; KEGG: dba:Dbac_3326 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type.
  
  
 
0.910
Desaf_2887
Alcohol dehydrogenase; KEGG: dvm:DvMF_0330 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type.
  
  
 
0.910
Desaf_0615
TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor region; PAS fold; ATP-binding region, ATPase-like; KEGG: mth:MTH985 sensory transduction histidine kinase; SMART: ATP-binding region, ATPase-like; PAS.
       0.808
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.628
Desaf_1525
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
 
 
 0.589
Desaf_0612
KEGG: dma:DMR_04300 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0066; PFAM: Uncharacterized protein family UPF0066.
  
    0.512
Desaf_0327
PFAM: Protein of unknown function DUF1566; KEGG: dba:Dbac_0168 protein of unknown function DUF1566.
   
    0.506
Desaf_1276
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.504
Desaf_0613
Hypothetical protein.
       0.498
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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