STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0888KEGG: dvl:Dvul_1797 hypothetical protein. (167 aa)    
Predicted Functional Partners:
Desaf_0889
KEGG: dak:DaAHT2_2378 hypothetical protein.
       0.794
Desaf_0887
KEGG: dvm:DvMF_1034 hypothetical protein.
       0.780
Desaf_0886
KEGG: dma:DMR_26330 hypothetical protein.
       0.768
Desaf_0892
KEGG: dvl:Dvul_1792 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core.
  
 
 0.749
Desaf_0891
PFAM: Type II secretion system F domain; KEGG: dvm:DvMF_1029 type II secretion system protein.
  
  
 0.728
Desaf_0885
Twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: dvl:Dvul_1802 twitching motility protein; SMART: ATPase, AAA+ type, core.
     
 0.668
Desaf_2934
KEGG: nth:Nther_2075 hydrolase (HAD superfamily).
  
  
 0.643
Desaf_0199
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.592
Desaf_1234
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.592
Desaf_0890
KEGG: cja:CJA_2390 hypothetical protein.
       0.569
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.