STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_0907TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM; Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: nitrogenase cofactor biosynthesis protein NifB; SMART: Elongator protein 3/MiaB/NifB. (445 aa)    
Predicted Functional Partners:
Desaf_0906
Nitrogenase; KEGG: dvm:DvMF_2621 nitrogenase; PFAM: Nitrogenase/oxidoreductase, component 1; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.996
Desaf_0769
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.977
Desaf_0905
KEGG: dba:Dbac_0841 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.968
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
  
 0.947
Desaf_0768
KEGG: dsa:Desal_0444 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1.
 
  
 0.900
Desaf_1276
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
  
 0.752
Desaf_0766
PFAM: Nitrogen regulatory protein PII; KEGG: dal:Dalk_1521 nitrogen regulatory protein P-II.
 
  
 0.585
Desaf_3272
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dbr:Deba_2117 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
  
 0.585
Desaf_3386
PFAM: Bacterial extracellular solute-binding, family 1; KEGG: sfu:Sfum_1959 putative molybdenum ABC transporter, solute-binding protein.
 
  
 0.540
Desaf_2186
TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding protein.
  
  
 0.527
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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