STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1228PFAM: Extracellular ligand-binding receptor; KEGG: extracellular ligand-binding receptor. (416 aa)    
Predicted Functional Partners:
Desaf_1227
TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; HAMP linker domain; KEGG: dde:Dde_0711 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS.
 
   
 0.929
Desaf_1226
KEGG: dba:Dbac_0976 anti-sigma-factor antagonist; PFAM: Signal transduction response regulator, receiver region; Sulphate transporter/antisigma-factor antagonist STAS; SMART: Signal transduction response regulator, receiver region.
 
     0.867
Desaf_1225
Redoxin domain protein; PFAM: Redoxin; KEGG: dba:Dbac_0977 redoxin domain protein.
 
 
   0.796
Desaf_1224
KEGG: rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like.
 
    0.774
Desaf_2297
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_38960 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.757
Desaf_0330
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_45580 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.756
Desaf_0623
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_12080 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.690
Desaf_0331
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_45590 branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.689
Desaf_1223
DoxX family protein; PFAM: DoxX; KEGG: methylamine utilization MauE.
 
     0.685
Desaf_2298
ABC-type transporter, integral membrane subunit; PFAM: Bacterial inner-membrane translocator; KEGG: dma:DMR_38950 putative ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.683
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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