STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1237Hypothetical protein; KEGG: ajs:Ajs_0471 peptidoglycan binding domain-containing protein. (572 aa)    
Predicted Functional Partners:
Desaf_1238
KEGG: dma:DMR_28470 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal.
 
    0.750
Desaf_1236
Hypothetical protein.
       0.741
Desaf_1232
Hypothetical protein; KEGG: dal:Dalk_5148 PDZ/DHR/GLGF domain-containing protein.
  
  
 0.661
Desaf_1233
KEGG: dma:DMR_28370 general secretion pathway protein D precursor; TIGRFAM: Type II secretion system gspD; PFAM: Type II/III secretion system; NolW-like.
  
  
 0.657
Desaf_1234
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
     
 0.638
Desaf_1235
KEGG: sat:SYN_01550 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain.
  
  
 0.624
Desaf_1231
Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: bpo:BP951000_0487 tetratricopeptide repeat-containing protein.
  
  
 0.589
Desaf_0739
PFAM: Lipopolysaccharide biosynthesis; KEGG: psl:Psta_3842 lipopolysaccharide biosynthesis protein.
 
     0.572
Desaf_1144
PFAM: Polysaccharide export protein; Soluble ligand binding domain; KEGG: nwa:Nwat_2850 polysaccharide export protein.
 
     0.567
Desaf_1239
Hypothetical protein; KEGG: dma:DMR_28480 general secretion pathway protein H family protein.
  
    0.519
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.