STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1270KEGG: dak:DaAHT2_1138 radical SAM domain protein; PFAM: Radical SAM; Cobalamin (vitamin B12)-binding protein; SMART: Elongator protein 3/MiaB/NifB. (435 aa)    
Predicted Functional Partners:
Desaf_1271
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; KEGG: dps:DP1817 3-oxoacyl-(acyl carrier protein) synthase III.
 
     0.828
Desaf_3678
KEGG: ppd:Ppro_0919 radical SAM domain-containing protein; PFAM: Cobalamin (vitamin B12)-binding; Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
     0.772
Desaf_3180
Radical SAM domain protein; KEGG: cobalamin B12-binding domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
     0.745
Desaf_0912
KEGG: mac:MA0691 geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.561
Desaf_1352
KEGG: rce:RC1_0528 oxidoreductase with radical SAM domain, putative; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
  
     0.546
Desaf_1269
AIG2 family protein; PFAM: AIG2-like; KEGG: mfs:MFS40622_0524 AIG2 family protein.
       0.528
Desaf_3671
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
    0.480
Desaf_1255
KEGG: dps:DP1838 hypothetical protein.
 
     0.424
Desaf_1254
KEGG: dps:DP1839 hypothetical protein.
 
     0.420
Desaf_3677
PFAM: Beta-ketoacyl synthase, N-terminal; KEGG: beta-ketoacyl synthase.
  
     0.418
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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