STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1285KEGG: drt:Dret_0454 cytochrome c family protein. (501 aa)    
Predicted Functional Partners:
Desaf_1286
KEGG: dvm:DvMF_2531 cytochrome bd-type quinol oxidase subunit 1-like protein.
   
 0.995
Desaf_1349
PFAM: FAD dependent oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: cyt:cce_3313 putative FAD dependent oxidoreductase.
  
 
 0.964
Desaf_0536
KEGG: cytochrome d ubiquinol oxidase subunit II; TIGRFAM: Cytochrome bd ubiquinol oxidase, subunit II; PFAM: Cytochrome bd ubiquinol oxidase, subunit II.
  
 
 0.962
Desaf_1287
KEGG: dvl:Dvul_0758 hypothetical protein.
 
   
 0.947
Desaf_3702
KEGG: dsa:Desal_1042 hypothetical protein.
   
 
 0.865
Desaf_3551
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dba:Dbac_0170 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.785
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.750
Desaf_1469
PFAM: Polysulphide reductase, NrfD; KEGG: dsa:Desal_0182 polysulphide reductase NrfD.
   
 
 0.750
Desaf_2192
KEGG: dvl:Dvul_0447 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal.
  
 
 0.750
Desaf_3699
PFAM: Polysulphide reductase, NrfD; KEGG: dsa:Desal_1045 polysulphide reductase NrfD.
   
 
 0.750
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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