STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1357KEGG: pzu:PHZ_c2092 hypothetical protein. (302 aa)    
Predicted Functional Partners:
Desaf_1351
KEGG: rce:RC1_0527 CDP-paratose 2-epimerase; PFAM: NAD-dependent epimerase/dehydratase.
     0.985
Desaf_1359
PFAM: Methyltransferase type 12; KEGG: geo:Geob_3248 methyltransferase type 11.
 
     0.911
Desaf_1358
PFAM: Phosphoglycerate mutase; KEGG: met:M446_2115 phosphoglycerate mutase.
 
     0.891
Desaf_1350
KEGG: rce:RC1_0526 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase.
     0.889
Desaf_1353
PFAM: Glycosyl transferase, group 1; KEGG: sus:Acid_3013 glycosyl transferase, group 1.
 
  
 0.883
Desaf_1354
KEGG: rce:RC1_0530 hypothetical protein.
 
     0.881
Desaf_1356
KEGG: rce:RC1_0532 hypothetical protein.
 
     0.880
Desaf_1355
KEGG: geo:Geob_3246 hypothetical protein.
 
     0.875
Desaf_1352
KEGG: rce:RC1_0528 oxidoreductase with radical SAM domain, putative; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
     0.870
Desaf_0880
KEGG: sti:Sthe_2408 hypothetical protein.
  
     0.680
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.