STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1369KEGG: dde:Dde_0372 hypothetical protein. (252 aa)    
Predicted Functional Partners:
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.887
Desaf_1365
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: ferredoxin I.
 
     0.818
Desaf_1371
TIGRFAM: Sulphite reductase, dissimilatory-type beta subunit; KEGG: dvl:Dvul_2531 sulfite reductase, dissimilatory-type beta subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like.
 
     0.771
Desaf_1372
PFAM: Dissimilatory sulphite reductase D; KEGG: dissimilatory sulfite reductase D.
  
     0.768
Desaf_1370
TIGRFAM: Sulphite reductase, dissimilatory-type alpha subunit; KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type alpha subunit; PFAM: Nitrite/sulphite reductase 4Fe-4S region.
 
     0.766
Desaf_2954
KEGG: dma:DMR_16410 hypothetical protein.
  
     0.759
Desaf_0610
KEGG: dsa:Desal_0786 protein of unknown function UPF0153.
 
   
 0.730
Desaf_1464
KEGG: dsa:Desal_0187 hypothetical protein.
  
     0.728
Desaf_0533
PFAM: Protein of unknown function DUF81; KEGG: dvm:DvMF_2812 protein of unknown function DUF81.
  
     0.724
Desaf_0136
TIGRFAM: HDIG; KEGG: metal dependent phosphohydrolase.
 
  
 0.721
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.