STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1481KEGG: drt:Dret_0164 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Desaf_1487
KEGG: cytochrome b/b6 domain-containing protein.
  
 0.981
Desaf_0420
Formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; manually curated; Contains selenocysteine; KEGG: dsa:Desal_2659 formate dehydrogenase, alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence.
 
 0.979
Desaf_1800
Formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; manually curated; Prodigal; KEGG: dba:Dbac_0971 formate dehydrogenase, alpha subunit; TIGRFAM: Formate dehydrogenase, alpha subunit, anaerobic; Twin-arginine translocation pathway, signal sequence; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.979
Desaf_3077
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein.
  
  
  0.974
Desaf_1480
KEGG: drt:Dret_0165 iron-sulfur cluster-binding protein.
 
     0.948
Desaf_0419
Fe-S-cluster-containing hydrogenase component protein; KEGG: dsa:Desal_2658 FdhB2.
  
  
 
0.926
Desaf_1801
KEGG: formate dehydrogenase subunit beta, FdhB2.
  
  
 
0.926
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.914
Desaf_1864
KEGG: formate dehydrogenase; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
    
 0.910
Desaf_2423
Formylmethanofuran dehydrogenase subunit E region; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
    
 0.909
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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