STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1575KEGG: dvm:DvMF_2822 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Desaf_1574
KEGG: rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC.
       0.800
Desaf_1576
PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; manually curated; KEGG: dsa:Desal_3462 penicillin-binding protein 2; TIGRFAM: Penicillin-binding protein 2.
       0.800
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.800
Desaf_1578
PFAM: Protein of unknown function DUF583; KEGG: hypothetical protein.
       0.626
Desaf_1573
KEGG: dba:Dbac_3356 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl.
       0.505
Desaf_1572
TIGRFAM: Conserved hypothetical protein CHP01212; PFAM: Radical SAM; KEGG: dvm:DvMF_2819 conserved hypothetical radical SAM protein; SMART: Elongator protein 3/MiaB/NifB.
       0.400
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.