STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1662ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: dol:Dole_0400 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family. (301 aa)    
Predicted Functional Partners:
Desaf_1063
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: drt:Dret_0026 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 
 0.996
Desaf_1064
ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: drt:Dret_0027 ABC-3 protein.
 
 
 0.995
Desaf_1661
KEGG: sfu:Sfum_0025 ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.721
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.717
rpmB
TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: dsa:Desal_0665 ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.713
Desaf_1664
KEGG: hypothetical protein.
     
 0.581
Desaf_1663
PFAM: Protein of unknown function DUF318, transmembrane; KEGG: dbr:Deba_2455 permease.
       0.561
Desaf_1665
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
     
 0.467
Desaf_3794
PFAM: MotA/TolQ/ExbB proton channel; KEGG: drt:Dret_1588 MotA/TolQ/ExbB proton channel.
  
  
 0.452
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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