STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1663PFAM: Protein of unknown function DUF318, transmembrane; KEGG: dbr:Deba_2455 permease. (320 aa)    
Predicted Functional Partners:
Desaf_1664
KEGG: hypothetical protein.
  
  
 0.882
Desaf_1665
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.618
Desaf_0546
PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: mxa:MXAN_3432 multicopper oxidase domain-containing protein.
  
  
 0.576
Desaf_2389
KEGG: tjr:TherJR_0948 bilirubin oxidase; PFAM: Multicopper oxidase, type 2; Multicopper oxidase, type 3.
  
  
 0.576
Desaf_1662
ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: dol:Dole_0400 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.563
Desaf_1661
KEGG: sfu:Sfum_0025 ferric uptake regulator family protein; Belongs to the Fur family.
       0.448
Desaf_2157
DGC domain protein; PFAM: DGC; KEGG: sfu:Sfum_3599 hypothetical protein.
  
  
 0.404
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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