STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1808TIGRFAM: CoA enzyme activase; KEGG: dba:Dbac_1928 CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type. (259 aa)    
Predicted Functional Partners:
Desaf_1807
PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: dsa:Desal_0712 2-hydroxyglutaryl-CoA dehydratase D-component.
 
 0.992
Desaf_3020
Selenium metabolism protein YedF; KEGG: dvm:DvMF_0368 hypothetical protein; TIGRFAM: SirA-related, selenium metabolism; PFAM: SirA-like; Belongs to the sulfur carrier protein TusA family.
 
     0.597
Desaf_1809
KEGG: dbr:Deba_0794 hypothetical protein.
 
     0.563
Desaf_1810
KEGG: dal:Dalk_4884 transcriptional regulator, XRE family.
       0.442
Desaf_1218
CoA-substrate-specific enzyme activase; KEGG: tye:THEYE_A0388 (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein; TIGRFAM: CoA enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; Protein of unknown function DUF2229, CoA enzyme activase.
 
   
0.408
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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