STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_1867PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dol:Dole_1150 coenzyme F420 hydrogenase/dehydrogenase beta subunit. (370 aa)    
Predicted Functional Partners:
Desaf_1040
Hydrogenase maturation protease; KEGG: dat:HRM2_11700 HyaD2; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein.
 
 
 0.951
Desaf_0336
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dsa:Desal_0232 methyl-viologen-reducing hydrogenase delta subunit.
  
 
 0.895
Desaf_1865
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: drt:Dret_0420 methyl-viologen-reducing hydrogenase delta subunit.
  
 
 0.880
Desaf_1866
PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_0421 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.874
Desaf_1863
Response regulator receiver protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Signal transduction response regulator, receiver region; KEGG: response regulator receiver.
 
 
 0.867
Desaf_1385
PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: dat:HRM2_11730 MvhG.
 
 
 0.846
Desaf_1861
KEGG: CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG.
  
 
 0.839
Desaf_1864
KEGG: formate dehydrogenase; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
 
   
 0.823
Desaf_2138
PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: hut:Huta_2604 NADH ubiquinone oxidoreductase 20 kDa subunit.
  
 
 0.792
Desaf_3127
KEGG: dvl:Dvul_1245 nickel-dependent hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.792
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.