STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2003PFAM: Protein of unknown function DUF1264; KEGG: sli:Slin_5113 protein of unknown function DUF1264. (262 aa)    
Predicted Functional Partners:
Desaf_1348
KEGG: geo:Geob_0340 hypothetical protein.
  
     0.748
Desaf_2945
KEGG: avn:Avin_11090 short-chain dehydrogenase/reductase; PFAM: Short-chain dehydrogenase/reductase SDR.
  
     0.574
Desaf_2004
KEGG: dac:Daci_2057 fis family two component sigma-54-specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core.
       0.496
Desaf_2005
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Diverse 7TM receptor, transmembrane region; PAS fold-4; KEGG: ank:AnaeK_1728 histidine kinase; SMART: ATP-binding region, ATPase-like; PAS.
       0.496
Desaf_2224
Aspartate transaminase; KEGG: scl:sce3029 aminotransferase; PFAM: Aminotransferase, class I/II.
  
     0.457
Desaf_1515
PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding protein; KEGG: sti:Sthe_0210 alcohol dehydrogenase GroES domain protein.
  
     0.449
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.