STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2012UPF0391 membrane protein ytjA; KEGG: pat:Patl_1732 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328. (53 aa)    
Predicted Functional Partners:
Desaf_3219
CsbD family protein; PFAM: CsbD-like; KEGG: gym:GYMC10_0706 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.929
Desaf_1091
KEGG: ava:Ava_C0139 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria.
 
  
 0.800
Desaf_2274
PFAM: Transport-associated; KEGG: dde:Dde_2000 transport-associated protein.
  
  
 0.765
Desaf_2411
KEGG: sat:SYN_00866 hypothetical protein.
   
    0.696
Desaf_3318
Protein of unknown function DUF1458; PFAM: Dodecin flavoprotein; KEGG: met:M446_4704 hypothetical protein.
   
  
 0.596
Desaf_0910
PFAM: ABC-2 type transporter; KEGG: nhl:Nhal_3670 ABC-2 type transporter.
   
    0.539
Desaf_0758
Teichoic-acid-transporting ATPase; PFAM: ABC transporter-like; KEGG: dol:Dole_1285 ABC transporter-related protein; SMART: ATPase, AAA+ type, core.
   
    0.489
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.489
Desaf_2479
PFAM: Domain of unknown function DUF2382, C-terminal; KEGG: sus:Acid_7532 hypothetical protein.
  
    0.459
Desaf_2496
Ferritin Dps family protein; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
  
    0.427
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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