STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2054PFAM: Sodium/calcium exchanger membrane region; KEGG: dvm:DvMF_1109 sodium/calcium exchanger membrane region. (409 aa)    
Predicted Functional Partners:
Desaf_3467
PFAM: CopG-like DNA-binding protein; KEGG: dvl:Dvul_2607 CopG family transcriptional regulator.
  
     0.578
Desaf_1925
KEGG: dvu:DVU2856 hypothetical protein.
  
     0.447
Desaf_0325
PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; KEGG: dde:Dde_3572 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
  
     0.413
Desaf_2053
KEGG: dma:DMR_28750 hypothetical protein.
       0.410
Desaf_2055
PFAM: Protein of unknown function DUF169; KEGG: dbr:Deba_3208 protein of unknown function DUF169.
       0.402
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.