STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2135TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dap:Dacet_1182 TRAP transporter solute receptor, TAXI family. (326 aa)    
Predicted Functional Partners:
Desaf_2134
Hypothetical protein; KEGG: ade:Adeh_2645 cellulose biosynthesis (CelD)-like protein.
       0.709
Desaf_3472
KEGG: dsa:Desal_2697 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
     0.654
Desaf_3470
PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: family 7 extracellular solute-binding protein.
  
   
 0.607
Desaf_0426
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dba:Dbac_2929 TRAP C4-dicarboxylate transport system permease DctM subunit.
  
     0.425
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.