STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2292KEGG: dbr:Deba_1313 outer membrane protein domain-containing protein. (226 aa)    
Predicted Functional Partners:
Desaf_1231
Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: bpo:BP951000_0487 tetratricopeptide repeat-containing protein.
  
 
 0.503
Desaf_1425
KEGG: fnu:FN1787 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat.
  
 
 0.503
Desaf_2095
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; KEGG: dsa:Desal_3664 tetratricopeptide TPR_2 repeat protein.
  
   0.415
Desaf_1008
PFAM: Glycosyl transferase, family 2; KEGG: dma:DMR_14840 putative glycosyltransferase.
  
   0.413
Desaf_2291
Hypothetical protein; KEGG: mag:amb0887 surface antigen.
       0.408
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.