STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2387PFAM: Di-heme cytochrome c peroxidase; KEGG: mac:MA2908 cytochrome c peroxidase. (420 aa)    
Predicted Functional Partners:
Desaf_3797
PFAM: WD40-like Beta Propeller; KEGG: dsa:Desal_2478 WD40 domain protein beta propeller.
  
 
 0.569
Desaf_3331
KEGG: cytochrome c peroxidase.
  
    0.496
Desaf_2178
Lactate utilization protein B/C; PFAM: Protein of unknown function DUF162; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Cysteine-rich region, CCG; KEGG: drt:Dret_1031 protein of unknown function DUF162.
  
  
 0.460
msrB
KEGG: sat:SYN_01261 peptide methionine sulfoxide reductase; manually curated; TIGRFAM: Methionine sulphoxide reductase B; PFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB.
     
 0.433
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.431
Desaf_2386
TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: dsa:Desal_1913 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region.
       0.431
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.