STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2444PFAM: Nitroreductase-like; KEGG: dau:Daud_1944 nitroreductase. (192 aa)    
Predicted Functional Partners:
Desaf_3811
KEGG: hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like; Tetratricopeptide TPR-1.
  
  
 0.601
Desaf_1463
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dat:HRM2_10330 hypothetical protein.
  
  
 0.590
Desaf_0517
YcaO-domain protein; KEGG: dde:Dde_2408 hypothetical protein; TIGRFAM: YcaO-like; PFAM: YcaO-like.
  
  
 0.574
Desaf_0996
Long-chain-fatty-acid--CoA ligase; KEGG: dvm:DvMF_2357 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.519
Desaf_1833
KEGG: nml:Namu_4497 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.519
Desaf_2909
KEGG: dsa:Desal_0743 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.519
Desaf_0394
PFAM: ABC-2 type transporter; KEGG: pcu:pc1886 hypothetical protein.
  
  
 0.479
Desaf_0395
PFAM: ABC-2 type transporter; KEGG: pcu:pc1887 hypothetical protein.
  
  
 0.479
Desaf_1257
PFAM: ABC-2 type transporter; KEGG: dps:DP1836 ABC transporter permease.
  
  
 0.479
Desaf_1337
PFAM: ABC-2 type transporter; KEGG: sfu:Sfum_0666 ABC-2 type transporter.
  
  
 0.479
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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