STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2450Ribonuclease BN; KEGG: cpi:Cpin_0412 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related. (333 aa)    
Predicted Functional Partners:
Desaf_2449
Protein of unknown function UPF0118; PFAM: Uncharacterized protein family UPF0118; KEGG: sfu:Sfum_0292 hypothetical protein.
  
  
 0.755
Desaf_2448
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
    0.754
Desaf_2447
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dsa:Desal_2773 extracellular solute-binding protein family 5.
       0.644
Desaf_0310
KEGG: met:M446_5045 putative DNA topoisomerase I; manually curated.
  
    0.516
Desaf_0772
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mdi:p2METDI0025 endonuclease/exonuclease/phosphatase.
  
     0.516
Desaf_2184
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
      0.506
Desaf_1523
PFAM: Protein of unknown function DUF1206; KEGG: met:M446_0539 hypothetical protein.
 
     0.464
Desaf_0956
KEGG: cyc:PCC7424_2216 hypothetical protein.
 
    0.420
Desaf_2167
KEGG: dol:Dole_2881 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight.
  
  
 0.416
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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