STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2468KEGG: dba:Dbac_2267 hypothetical protein. (118 aa)    
Predicted Functional Partners:
Desaf_2465
KEGG: dba:Dbac_2270 hypothetical protein.
       0.792
Desaf_2466
KEGG: dvm:DvMF_1769 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
       0.790
Desaf_2467
KEGG: sfu:Sfum_0651 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region.
       0.785
Desaf_2469
Putative sigma54 specific transcriptional regulator; TIGRFAM: PAS; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold; KEGG: dvm:DvMF_1766 sigma54 specific transcriptional regulator with PAS/PAC sensor, fis family; SMART: ATPase, AAA+ type, core.
  
    0.759
Desaf_2470
KEGG: dba:Dbac_2265 hypothetical protein.
       0.681
Desaf_2471
PFAM: Protein of unknown function DUF81; KEGG: dvm:DvMF_1764 protein of unknown function DUF81.
       0.642
Desaf_2464
KEGG: dma:DMR_40050 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region.
       0.605
Desaf_2463
KEGG: dvu:DVU2967 sensor histidine kinase/response regulator; PFAM: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region; SMART: ATP-binding region, ATPase-like; Signal transduction response regulator, receiver region.
       0.548
Desaf_1276
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.494
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.476
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.