STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2620PFAM: Protein of unknown function DUF214, permase predicted; KEGG: hypothetical protein. (417 aa)    
Predicted Functional Partners:
Desaf_2621
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
 
 
 0.980
Desaf_2619
KEGG: hypothetical protein.
 
 
 
 0.970
macB
Phosphonate-transporting ATPase; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
0.813
lolD
Phosphonate-transporting ATPase; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 
 0.764
Desaf_1104
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: sfu:Sfum_1004 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 
 0.744
Desaf_0484
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: pca:Pcar_0269 ABC-type transport system, ATP-binding component; SMART: ATPase, AAA+ type, core.
 
 
 0.743
Desaf_1738
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: dba:Dbac_1672 ABC transporter related; SMART: ATPase, AAA+ type, core.
  
 
 0.721
Desaf_3773
Polyamine-transporting ATPase; PFAM: ABC transporter-like; KEGG: ppd:Ppro_1984 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 
 0.713
Desaf_1670
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dma:DMR_19590 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
  
 
 0.675
Desaf_3059
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: ABC transporter-like protein; SMART: ATPase, AAA+ type, core.
  
 
 0.675
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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