STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_2995KEGG: dba:Dbac_0400 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Desaf_2996
KEGG: hypothetical protein.
       0.693
Desaf_2997
HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: dma:DMR_21780 haloacid dehalogenase-like hydrolase family protein; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase.
       0.674
tatA
Sec-independent protein translocase protein tatA/E-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.586
Desaf_2998
PFAM: Protein of unknown function YGGT; KEGG: drt:Dret_1665 protein of unknown function YGGT.
       0.504
Desaf_3000
UPF0235 protein yggU; Manually curated; HAMAP: Protein of unknown function DUF167; KEGG: hypothetical protein; PFAM: Protein of unknown function DUF167; Belongs to the UPF0235 family.
       0.501
Desaf_2999
KEGG: dsa:Desal_2401 DivIVA family protein; TIGRFAM: DivIVA domain; PFAM: DivIVA.
       0.485
Desaf_3001
KEGG: drt:Dret_1663 hypothetical protein.
       0.460
Desaf_3003
KEGG: dma:DMR_21840 acetolactate synthase 3 regulatory subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT.
       0.455
Desaf_3002
TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: dsa:Desal_2398 acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding protein.
       0.428
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.