STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_3128TIGRFAM: [Ni-Fe]-hydrogenase, small subunit; Twin-arginine translocation pathway, signal sequence; KEGG: drt:Dret_0265 hydrogenase (NiFe) small subunit HydA; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; Twin-arginine translocation pathway, signal sequence, subgroup. (317 aa)    
Predicted Functional Partners:
Desaf_3127
KEGG: dvl:Dvul_1245 nickel-dependent hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase, large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.996
Desaf_3130
KEGG: dsa:Desal_2049 nickel-dependent hydrogenase large subunit; PFAM: Nickel-dependent hydrogenase, large subunit.
 
 0.986
Desaf_3126
KEGG: drt:Dret_0267 hydrogenase expression/formation protein; TIGRFAM: Peptidase A31, hydrogenase expression/formation protein; Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein.
 
  
 0.927
Desaf_3129
KEGG: dsa:Desal_2048 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein.
 
  
 0.875
Desaf_2186
TIGRFAM: Pyruvate-flavodoxin oxidoreductase; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; PFAM: Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Thiamine pyrophosphate enzyme, C-terminal TPP-binding protein.
  
  
 0.826
Desaf_3699
PFAM: Polysulphide reductase, NrfD; KEGG: dsa:Desal_1045 polysulphide reductase NrfD.
  
  
 0.666
Desaf_3125
KEGG: dsa:Desal_1918 hydrogenase assembly chaperone HypC/HupF; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC.
 
 
 0.660
Desaf_1686
PFAM: Fumarate reductase respiratory complex; KEGG: dsa:Desal_0720 fumarate reductase respiratory complex transmembrane subunit.
   
  
 0.656
Desaf_3300
KEGG: hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like.
 
  
 0.655
Desaf_0131
KEGG: dba:Dbac_0140 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein.
 
   
 0.637
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.