STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_3360KEGG: sfu:Sfum_0795 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Desaf_1333
PFAM: AMP-dependent synthetase/ligase; Phosphopantetheine-binding; Phospholipid/glycerol acyltransferase; KEGG: nhl:Nhal_3081 AMP-dependent synthetase and ligase; SMART: Phospholipid/glycerol acyltransferase.
  
 
 0.884
Desaf_1851
KEGG: mca:MCA2285 hypothetical protein.
  
 
 0.849
Desaf_2909
KEGG: dsa:Desal_0743 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
    
 0.806
rpmA
TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: dma:DMR_39710 50S ribosomal protein L27; PFAM: Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.644
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.640
msrB
KEGG: sat:SYN_01261 peptide methionine sulfoxide reductase; manually curated; TIGRFAM: Methionine sulphoxide reductase B; PFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB.
    
   0.633
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.633
rpmG
TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: 50S ribosomal protein L33; PFAM: Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.633
rpsP
TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: dba:Dbac_3305 ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.633
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.633
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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