STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_3444KEGG: dal:Dalk_4550 hypothetical protein. (858 aa)    
Predicted Functional Partners:
Desaf_3445
KEGG: dal:Dalk_4551 hypothetical protein.
       0.780
Desaf_3439
Hypothetical protein; KEGG: ehi:EHI_131230 actin.
       0.773
Desaf_3440
Hypothetical protein.
       0.773
Desaf_3441
Hypothetical protein.
       0.773
Desaf_3442
Hypothetical protein.
       0.773
Desaf_3443
KEGG: dde:Dde_1065 hypothetical protein.
       0.773
Desaf_3446
KEGG: plm:Plim_4269 hypothetical protein.
       0.773
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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