STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_3464PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ara:Arad_0370 amino acid efflux protein. (211 aa)    
Predicted Functional Partners:
Desaf_0951
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mrb:Mrub_1886 lysine exporter protein (LysE/YggA).
  
     0.774
Desaf_3465
KEGG: gur:Gura_1215 plasmid maintenance system killer; manually curated; PFAM: Plasmid maintenance system killer.
       0.502
Desaf_3466
Plasmid maintenance system antidote protein, XRE family; TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: putative plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3.
       0.486
Desaf_0058
PFAM: Protein of unknown function DUF6, transmembrane; KEGG: hypothetical protein.
  
   
 0.409
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.