STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Desaf_3686Hypothetical protein; KEGG: amd:AMED_0303 SGNH hydrolase. (279 aa)    
Predicted Functional Partners:
Desaf_3685
PFAM: Alpha/beta hydrolase fold-1; KEGG: hse:Hsero_2558 poly(3-hydroxybutyrate) depolymerase.
 
   
 0.816
Desaf_3768
KEGG: rmr:Rmar_1111 protein of unknown function DUF255.
   
 
 0.511
Desaf_3687
TIGRFAM: Pyruvate kinase; KEGG: dba:Dbac_3014 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; Belongs to the pyruvate kinase family.
     
 0.451
Desaf_3500
PKD domain containing protein; SMART: PKD; KEGG: mbr:MONBRDRAFT_12802 hypothetical protein.
  
   0.435
Desaf_0711
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: opr:Ocepr_0796 short-chain dehydrogenase/reductase sdr.
  
  
 0.413
Your Current Organism:
Desulfocurvibacter africanus
NCBI taxonomy Id: 690850
Other names: D. africanus subsp. africanus str. Walvis Bay, Desulfocurvibacter africanus str. Walvis Bay, Desulfocurvibacter africanus subsp. africanus str. Walvis Bay, Desulfovibrio africanus ATCC 19997, Desulfovibrio africanus str. Walvis Bay, Desulfovibrio africanus strain Walvis Bay
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.