Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSACC_167Predicted dehydrogenase. (383 aa)    
Predicted Functional Partners:
TSACC_166
Sugar phosphate isomerase.
 
    0.903
TSACC_165
Predicted dehydrogenase.
 
     0.819
GAT33744.1
Predicted dehydrogenase.
  
     0.652
TSACC_168
LacI family transcriptional regulator.
       0.559
GAT31847.1
Predicted dehydrogenase.
  
     0.533
GAT31793.1
Sugar phosphate isomerase/epimerase.
  
    0.512
GAT32552.1
Predicted dehydrogenase.
  
     0.481
TSACC_164
Signal transduction histidine kinase.
   
   0.459
GAT35289.1
Sugar phosphate isomerase/epimerase.
  
    0.458
GAT32647.1
Predicted dehydrogenase.
  
     0.420
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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