Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TSACC_170Universal stress protein family protein. (542 aa)    
Predicted Functional Partners:
GAT33457.1
Hypothetical protein.
 
     0.762
GAT33838.1
Hypothetical protein.
  
     0.746
TSACC_382
N-acetylmuramoyl-L-alanine amidase.
  
     0.743
GAT33094.1
Hypothetical protein.
  
     0.740
GAT32836.1
LPS assembly outer membrane protein LptD.
 
   
 0.669
GAT34120.1
Outer membrane assembly lipoprotein YfiO.
  
     0.623
GAT34186.1
Hypothetical protein.
  
     0.611
GAT33549.1
Transcription elongation factor, GreA/GreB family; Belongs to the GreA/GreB family.
  
     0.605
GAT31788.1
Chaperone for outer membrane proteins, Skp family.
  
     0.602
GAT33377.1
Hypothetical protein.
  
     0.557
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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