Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TSACC_197Beta-mannosidase; Belongs to the glycosyl hydrolase 2 family. (823 aa)    
Predicted Functional Partners:
TSACC_198
AraC-type DNA-binding protein.
       0.551
TSACC_195
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.492
TSACC_192
Von Willebrand factor type A domain-containing protein.
       0.491
TSACC_193
Putative ABC transport system permease protein.
       0.491
TSACC_194
Putative ABC transport system ATP-binding protein.
       0.491
TSACC_196
Small ligand-binding sensory domain FIST.
       0.491
GAT34430.1
YhcH/YjgK/YiaL family protein.
   
  0.479
GAT32270.1
Glycosyl hydrolase family 20.
 
  0.422
GAT34681.1
Hypothetical protein.
     
  0.411
GAT34708.1
Cellulase.
     
  0.411
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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