STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCGlucuronate isomerase. (468 aa)    
Predicted Functional Partners:
GAT32730.1
Tagaturonate reductase.
 
 
 0.979
GAT32731.1
Altronate hydrolase.
  
 0.940
GAT35540.1
Pectate lyase superfamily protein; Belongs to the glycosyl hydrolase 28 family.
 
  
  0.898
GAT31884.1
Tagaturonate epimerase.
 
  
 0.827
TSACC_314
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
  0.794
GAT32213.1
L-ribulose-5-phosphate 4-epimerase.
     
 0.782
GAT34380.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
     
 0.758
GAT35412.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.704
GAT32732.1
2-dehydro-3-deoxygluconokinase.
 
   
 0.646
GAT32650.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.643
Your Current Organism:
Terrimicrobium sacchariphilum
NCBI taxonomy Id: 690879
Other names: CGMCC 1.5168, JCM 17479, Spartobacteria bacterium NM5, T. sacchariphilum, Terrimicrobium sacchariphilum Qiu et al. 2014 emend. Hahnke et al. 2016, strain NM-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.